Upload a count matrix for differential expression
Genes occupy the first column and sample names encode groups; CiteLab uses Welch t + BH and never claims DESeq2.
Related methods: DEG
Prepare the data
Use a gene-by-sample CSV with genes in the first column. Sample names containing ctrl/treat or control/treatment can be grouped automatically.
Method
The deterministic pipeline uses Welch's t-test, BH FDR, and log2(count+1). Report group n, |log2FC|, and padj thresholds.
Evidence boundary
Inspect the volcano plot and full table before enrichment or literature search. Mechanistic claims require a PMID/DOI returned by the tool.